2008 Summer Institute Program

NBCR Summer Institute 2008 Program for Mini-symposium and Training Sessions
  Mini Symposium: Cyberinfrastructure for Biomedicine I
  7:30 am Registration and poster setup   SDSC/Calit2 Synthesis Center Coordinator: Nancy Jensen
Aug 4, 2008, Monday 8:00 am Opening Remarks

John Wooley, Ph.D., UCSD

  Chair: Wilfred Li, Ph.D.
  8:10 am Cyberinfrastructure for Biomedicine

Peter W. Arzberger, Ph.D., UCSD

   
 

Session I: Multiscale modeling and visualization

  Chair: Michel Sanner, Ph.D.
  8:30 am

Translating microscopic imaging into multi-scale 3D structural models of normal and failing cardiomyocytes

Masahiko Hoshijima, M.D., Ph.D., UCSD

   
  9:15 am Multi-scale Geometric Modeling of Biomedical Systems: Bridging the Gap between Imaging and Simulation

Zeyun Yu, Ph.D., UCSD

   
  10:00 am

coffee break

     
  10:15 am Multi-scale Morse Theory and Data Streaming for Science Discovery

Valerio Pascucci, Ph.D., LLNL

   
  11:00 am VisTrails: Provenance and Data Exploration

Claudio Silva, Ph.D., U. Utah

   
  11:45 am

Visual tools for building, visualizing and interacting with multiscale models

Michel Sanner, Ph.D., NBCR/TSRI

   
  12:30 pm Lunch Buffet and Poster Session   Coordinator: Teri Simas
  Session II: Computer Aided Drug Design   Chair: Andy McCammon, Ph.D.
  2:00 pm Structure-based drug design targeting HIV-1 reverse transcriptase: overcoming resistance by inhibitor strategic flexibility

Eddy Arnold, Ph.D., Rutgers U.

   
  2:45 pm Docking and Design with AutoDock

David Goodsell, Ph.D., TSRI

   
  3:30 pm Tackling Receptor Flexibility in Computer-Aided Drug Design Rommie Amaro, Ph.D., UCSD    
  4:15 pm coffee break      
  4:30 pm Identification of a novel chromophore to restore vision in macular degeneration

Anne Hanneken, M.D., Scripps Memorial Hospital

   
  5:15 pm The Fluctuating Biological Target of Multiple Conformations: Using Freeze-frame, Click Chemistry in Ligand Design

Palmer Taylor, Ph.D., UCSD

   
  6:00 pm Overview of Training Sessions

Wilfred W. Li, Ph.D.

   
  6:15 pm Dinner   Cafe Vantanas/Price Center
  6:30 pm Minisymposium speakers dinner By invitation only
Aug 5-8, 2008,
Tuesday - Friday
Training Sessions Schedule available at the NBCR Public Wiki
Date Period Tracks Session Chairs/Coordinator Location Track Number

 

8 am to 12 pm Morning

Cluster/Grid Computing & Workflow Management Sriram Krishnan, Ph.D.
Guillaume Vareille, Ph.D.
EBU1,room 5702, Building 600 1
    Programming Scalable Scientific Applications Michael Holst, Ph.D.
Tim Kaiser, Ph.D.
EBU2, room 239, Building 610 2
    Multiscale Imaging Analysis and Visualization Michel Sanner, Ph.D.
Zeyun Yu, Ph.D.
PFBH, room 161, Building 601 6
 

1 pm to 5 pm Afternoon

Virtual Screening & Computer Aided Drug Design Rommie Amaro, Ph.D.
David Goodsell, Ph.D.
EBU1,room 5702, Building 600

3

    Molecular Electrostatics and Diffusion Robert Konecny, Ph.D.
Gary Huber, Ph.D.
EBU2, room 239, Building 610 5

Aug 7, 2008, Thursday

6 pm RSVP Group Dinner and Certificate Presentation Rock Bottom Brewery Coordinator: Teri Simas
           
  Mini Symposium: Cyberinfrastructure for Biomedicine II
  8:00 am Registration and poster setup   PFBH Fung Auditorium Coordinator: Nancy Jensen
Aug 11, 2008, Monday Session III: Computational Modeling of Heart Diseases   Chair: Andrew McCulloch, Ph.D.
  8:30 am The reconstruction of the spontaneous action potential of cardiomyocytes in pulmonary vein

Chae Hun Leem, M.D., U. Ulsan

   
  9:15 am A concise model for β-adrenergic stimulation of the rabbit ventricular myocyte

Jose Puglisi, Ph.D., UC Davis

   
  10:00 am A Bioengineering Model of Coronary Circulation

Ghassan Kassab, Ph.D., IUPUI

   
  10:45 am coffee break      
  11:00 am A Role for Finite Element Models in Improving Diagnosis and Treatment of Ischemic Heart Disease

Jeffrey Holmes, M.D., Ph.D., U. Virginia

   
  11:45 am Interactions of biventricular pacing with alterations in heart failure

Roy Kerckhoff, Ph.D., UCSD

   
  12:30 pm Closing Remakrs

Peter W. Arzberger, Ph.D., UCSD

   
  12:30 - 2:00 pm Lunch Buffet and Poster Session   Coordinator: Teri Simas
  2 - 5 pm Training session starts    
  6:30 pm Mini-symposium speakers dinner By invitation only
*Aug 11-13, 2008,
Monday - Wednesday
Training Sessions Schedule available at the NBCR Public Wiki
Date Period Tracks Session Chairs/Coordinator Location Track Number
  full day Computational Cardiac Electrophysiology and Mechanics* Andrew McCulloch, Ph.D.
Roy Kerckhoffs, Ph.D.
PFBH, room 161, Building 601 4

Aug 12, 2008, Tuesday

RSVP Group Dinner and Certificate Presentation Rock Bottom Brewery Coordinator: Teri Simas